Posts by Kyle Tretina
Simulation / Modeling / Design
Jun 16, 2026
How to Optimize Transformer-Based Models for Low-Precision Training
Transformer architectures are the backbone of many modern large language and generative AI models. As these models grow in size, training runs consume more GPU...
9 MIN READ
Simulation / Modeling / Design
Jun 15, 2026
Fine-Tuning Biological Foundation Models with LoRA Using NVIDIA BioNeMo Recipes
Foundation models are reshaping computational biology. Pretrained on massive corpora of protein or genomic sequences, models such as ESM2 (a protein language...
12 MIN READ
Simulation / Modeling / Design
Apr 28, 2026
Scaling Biomolecular Modeling Using Context Parallelism in NVIDIA BioNeMo
For decades, computational biology has operated under a reductionist compromise. To fit complex biological systems into the limited memory of a single GPU,...
9 MIN READ
Data Science
Apr 09, 2026
How to Accelerate Protein Structure Prediction at Proteome-Scale
Proteins rarely function in isolation as individual monomers. Most biological processes are governed by proteins interacting with other proteins, forming...
10 MIN READ
Agentic AI / Generative AI
Mar 25, 2026
Designing Protein Binders Using the Generative Model Proteina-Complexa
Developing new protein-based therapies and catalysts involves the challenging task of designing protein binders, or proteins that bind to a target protein or...
10 MIN READ
Data Science
Nov 05, 2025
Scale Biology Transformer Models with PyTorch and NVIDIA BioNeMo Recipes
Training models with billions or trillions of parameters demands advanced parallel computing. Researchers must decide how to combine parallelism strategies,...
7 MIN READ