Posts by Kyle Tretina
Simulation / Modeling / Design
Apr 28, 2026
Scaling Biomolecular Modeling Using Context Parallelism in NVIDIA BioNeMo
For decades, computational biology has operated under a reductionist compromise. To fit complex biological systems into the limited memory of a single GPU,...
9 MIN READ
Data Science
Apr 09, 2026
How to Accelerate Protein Structure Prediction at Proteome-Scale
Proteins rarely function in isolation as individual monomers. Most biological processes are governed by proteins interacting with other proteins, forming...
10 MIN READ
Agentic AI / Generative AI
Mar 25, 2026
Designing Protein Binders Using the Generative Model Proteina-Complexa
Developing new protein-based therapies and catalysts involves the challenging task of designing protein binders, or proteins that bind to a target protein or...
10 MIN READ
Data Science
Nov 05, 2025
Scale Biology Transformer Models with PyTorch and NVIDIA BioNeMo Recipes
Training models with billions or trillions of parameters demands advanced parallel computing. Researchers must decide how to combine parallelism strategies,...
7 MIN READ
Developer Tools & Techniques
Nov 04, 2025
How to Predict Biomolecular Structures Using the OpenFold3 NIM
​​For decades, one of biology’s deepest mysteries was how a string of amino acids folds itself into the intricate architecture of life. Researchers built...
5 MIN READ
Data Science
Oct 28, 2025
Introducing the CodonFM Open Model for RNA Design and Analysis
Open research is critical for driving innovation, and many breakthroughs in AI and science are achieved through open collaboration. In the field of digital...
10 MIN READ