NVIDIA Clara Imaging
Today, GPUs are found in almost all imaging modalities, including CT, MRI, x-ray, and ultrasound - bringing compute capabilities to the edge devices. With the boom of deep learning research in medical imaging, more efficient and improved approaches are being developed to enable AI-assisted workflows.
To develop these AI capable applications, the data needs to be made AI-ready. NVIDIA Clara’s AI-Assisted Annotation does so by providing APIs and a toolkit to bring AI-assisted annotation capabilities to any medical viewer. Post annotation, data scientists and researchers need to build a robust AI model. To enable this, NVIDIA Clara Train includes techniques like AutoML, privacy-preserving federated learning and Transfer Learning. One trained AI model is available in Clara Deploy and provides a reference framework to take an AI model and write an application workflow around it to enable interfacing in a hospital like environment. Clara Deploy includes platform capabilities required to support multi-AI, multi-domain workflows in a seamless manner.
New Clara Features to Help COVID-19 Research
Providing researchers an additional tool in the battle against COVID-19, NVIDIA Clara Imaging has released Clara Train MMARs for CT Lung segmentation and COVID-19 Chest CT Classification, providing researchers with a state-of-the art implementation and ability to optimize these models with the Clara Train application framework. Also available is the Clara Deploy reference pipeline for COVID-19 Chest CT Classification to provide researchers with a reference deployment pipeline which can be seamlessly evaluated for localized data.
to deliver all the necessary tools for healthcare application developers.
The Clara Train reference applications is a domain optimized developer application framework that includes APIs for AI-Assisted Annotation, making any medical viewer AI capable and a TensorFlow based training framework with pre-trained models to kick start AI development with techniques like transfer learning, federated learning and AutoML.
Clara Train includes AI-Assisted Annotation APIs and Annotation server that can be seamlessly integrated into any medical viewer making them AI capable. The training framework includes decentralized learning techniques like federated learning and transfer learning. Clara Train also makes available model applications packaged as MMARS (Medical Model ARchive) available to users, providing an intuitive config based environment for data scientists and researchers to get kick-started with AI development.
NVIDIA’s latest release of Clara Train includes the AutoML module. Clara Train’s AutoML functionality makes the process of hyper-parameter tuning seamless by intelligently searching for optimal parameter settings to train models automatically.
Read our developer blog to learn more about Clara Train’s AutoML feature.
New AI-Assisted Annotation Features
- Interactive annotation kick-started with new AI Model for unseen organs allowing for image labeling when a pre-trained model is not available
- Customize annotation workflows by bringing your own models or models to an annotation workflow.
OPTIMIZED AI TRAINING FOR MEDICAL IMAGING
Horovod - Automatic Mixed Precision - Smart Cache - 8 GPUs
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New Training Framework Features
- AI models for chest CT for COVID-19 detection.
- Clara Train Federated learning v3.0 enables researchers to collaborate and build AI models without sharing private data. This feature is further enhanced by allowing users to extend this reference implementation by bringing their own component implementations like aggregators and privacy-preserving policies.
- AutoML makes the tedious and time-consuming task of parameter-tuning and testing for a new model seamless by searching the most optimal parameters to apply in a training workflow. The system enables researchers to bring their own AutoML component implementation for Controller, Hander and Executor.
- Performance optimizations - Up to 50X faster training with domain-optimized performance features like TensorFlow Keras based imaging pipeline, Smart Cache, Nova Grad optimizer, Automatic Mixed Precision etc.
Running NVIDIA Clara Train on AWS Cloud
Clara Train runs on-premise and on the cloud is now deployable in a highly available (HA) configuration on the AWS Cloud. The AWS Quick Start lowers the barrier to bringing up a secure, scalable infrastructure on the cloud. This deployment provides scalable access to NVIDIA V100 Tensor Core graphics processing units (GPUs) and the Amazon Elastic Compute Cloud (Amazon EC2) P3 instance type. This deployment is based on Amazon Elastic Container Service (Amazon ECS) and Amazon EC2. Amazon Elastic File System (Amazon EFS) is used for storage shared between containers.
An extensible reference development framework that facilitates turning AI models into AI-powered clinical workflows with built-in support for DICOM communication and the ability to interface with existing hospital infrastructures.
Clara Deploy provides a container-based development & deployment framework for mutli-AI, multi-domain workflows in smart hospitals - One platform managing and scaling Imaging, Genomics and Video Processing workloads. It uses Kubernetes under the hood and enables developers and data scientists to define a multi-staged container-based pipeline.
NVIDIA’s latest release of Clara Deploy SDK includes support for multi-AI, multi-domain workflows - one architecture orchestrating and scaling imaging, genomics, and video processing workloads. This reference platform delivers a unified foundation to enable intelligent workloads in smart hospitals.
Read our developer blog to learn all of Clara Deploy’s latest features and reference applications.
New Platform Features
- Supported pipeline composition with strongly typed operator interface enabling pre-runtime validation of pipelines, compatibility of concatenated operators in terms of data type, and allocation of memory for the pipeline using FAST I/O via CPDriver.
- Built-in scheduler to help manage and allocate resources to execute pipeline job.
- An AI model management tool with the ability to store and manage models locally through user inputs, pull models in from external stores via direct download services to create and manage model catalogs.
- A CLI Load Generator to simulate expected hospital workloads to ensure both the architecting of hardware and software can support the development of application pipelines.
- A Fast I/O feature to provide an interface to memory resources that are accessible by all operators running in the same pipeline. Memory resources can be used for efficient, zero-copy sharing and passing of data between operators.
New Reference Application Pipelines
- Detection of COVID-19 in CT datasets
- Digital Pathology
- Usage of Shared Memory in Multi AI CT Pipeline
- DICOM Series Selection Pipeline
- COVID-19 Classification for X-ray
- Prostate Segmentation
- Multi-AI Organ Segmentation
- 3D Cropping using shared memory
- DeepStream Video Batch
By clicking on the download Clara Deploy, you agree to the terms and conditions in this end user license agreement.
This is a release candidate for R5_3 - we will be providing hotfixes soon - please share any issues on dev forums.
Other Developer Tools
Clara reference applications are built on CUDA-X, a collection of libraries, tools, and technologies that deliver dramatically higher performance than alternatives across multiple application domains—from artificial intelligence to high-performance computing. Commonly used tools and APIs are provided here for your convenience.
|DEEP LEARNING LIBRARIES|
|IMAGE & SIGNAL PROCESSING|
Developer Blogs on NVIDIA Clara
Dive into the features and capabilities of the Clara Imaging application framework.
Open Source Framework for Medical Imaging
MONAI, an open source framework for healthcare builds on best practices from existing tools like NVIDIA Clara, NiftyNet, DLTK, and DeepNeuro. In this webinar, learn how you can engage and contribute to this framework.
Clara Imaging SDKs for COVID-19 Research
Learn the latest capabilities and reference workflows that developers can use to accelerate their research and development.
Hands-On Clara in the Medical Imaging Ecosystem
In this webinar, watch a real-time demonstration of a medical imaging workflow using open source components and the Clara Deploy application framework.
NVIDIA Clara Developer Sessions at GTC
Learn more about the Clara Train and Clara Deploy applicaiton frameworks in these deep dive on-demand technical sessions. These sessions focus on federated learning, AI model training, scalable and modular deployment of AI models, and connecting it all to a medical imaging ecosystem.
Get Started with NVIDIA Clara
NVIDIA's David Nola walks through how to integrate Clara Train and Clara Deploy medical imaging tools into existing AI infrastructure.
How Clara Federated Learning Works
Learn how NVIDIA Clara Federated Learning enables institutions to collaboratively build robust AI models for medical imaging while keeping patient data private.
An Overview of NVIDIA Clara Deploy
Take a closer look at how NVIDIA Clara Deploy works with this demo using a multi-AI imaging pipeline.
Deep Learning Training for Medical Imaging
Get hands-on training in AI for healthcare through the NVIDIA Deep Learning Institute (DLI). Take online courses like Medical Image Classification Using the MedNIST Dataset to get an introduction to deep learning for radiology or learn how to use generative adversarial networks (GANs) in Data Augmentation and Segmentation with Generative Adversarial Networks for Medical Imaging.
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